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NEMAT 1.0 documentation
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NEMAT 1.0 documentation
  • Installation
    • 1. Installation
    • 1.5 NEMAT Commands
  • Preparation
    • 2. Prepare a directory for a NEMAT run: nemat start
    • 3. Prepare the membrane-embedded protein (MEP) system.
    • 4. Prepare the membrane system.
    • 5. Prepare the ligands.
    • 6. About the mdp files
    • 7. Set up of NEMAT: the input.yaml file
  • Execution
    • 8. Running NEMAT.
    • 9. Obtain the results: nemat analyze.
  • Other features
    • 10. Other features.
  • Tutorials
    • Reproduce the results of the paper.
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Installation¶

  • 1. Installation
    • 1.1. Prerequisites
    • 1.2. Installation Steps
  • 1.5 NEMAT Commands
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